I'm just a layman but can anyone ELI5 how this can be squared with the OP, specifically with statements like
> It turns out our grey matter is teeming with bacteria, viruses and fungi
Reading just the beginning of that article "she experienced chronic pain, digestive problems and a cardiac arrhythmia", well, that is my life. I constantly have minor aspergillosis, and I have some lung nodules from some past fungal infections as well.
Keeping the microbiome under control is all about a healthy immune system.
But since my disorder affected my mental state they just labeled me as a psychiatric case and did not look any further, If anyone here is a doctor, please do not give up on psychiatric patients. Thanks.
Interesting case here:
Aspergillosis of the central nervous system in a previously healthy patient that simulated Creutzfeldt–Jakob disease
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5180434/
"He was admitted to the hospital with an occipital headache which he had endured for 2 months. For over 1 and a half months, he had also experienced behavioral disorders and a disruption of higher mental functions. He had retrograde and anterograde amnesia with both echolalia and the presence of visual hallucinations. "
Reminds me a bit of myself. After 2 COVID infections and 3 vaccines, I began experiencing digestive problems, sleep disturbance, fatigue and severe brain fog. I also was often dismissed by the doctors as simply being depressed. But I now know that I have long COVID. The fight against it is still ongoing and you can read about my struggle with it here: https://tunn3l.pro.
I'm currently working with my girlfriend on a sticker campaign to educate people on these illnesses (esp. me/cfs) in order to remove the Stigmatisation that many patients with similar symptoms expierience.
I literally have no idea why someone would downvote this comment. But someone did. This does not bother my ego, it bothers my sensibilities.
So, maybe we should not allow downvotes unless someone comments on why they thing the comment is negative. No need to do this for upvotes because there is no need to comment on things you agree with.
Downvoting without commenting leads to suppression without justification which can be bias or outright manipulation.
Or maybe the up and downvotes are the problem?
I put that in quotes because we barely study the microbiome as the root cause for many issues (incredibly difficult to isolate variables) and there's constantly reports of academic malfeasance. As time goes on we also see the microbiome is responsible in things like Alzheimer's and Parkinson's. But after every new discovery if you try to insinuate there's others, people will say "no no, it's just there's nothing else has to do with that"... intil the next discovery that was only found because they decided to actually invest money into researching it.
To me it seems to make HN favor bias instead of new ideas (which may be right or wrong, but without
Culturing from CSF in general will depend on the concentration of the microbe, whether they are viable, if antibiotics/antivirals were already initiated pre-collection, whether it's plated on the appropriate media (e.g. a rare microbe that only grows on one specific type of agar plate), etc. Culturing viruses is also hard/many hospital micro labs have moved away from that.
I think this study may suggest that we are failing to detect certain brain infections (and many are notoriously hard to diagnose if you don't catch them in the right window of time). But a brain microbiome sounds far-fetched. We even plate from brain tissue directly at times and aren't growing a bunch of organisms. I'd approach that claim with a healthy dose of skepticism.
It is I think not a particularly surprising take. But then often it can be valuable to have things that are kind of obvious codified into a paper of some sort so that we no longer have to rely on "but isn't that obvious?" and can instead point to some primary source that actually explains what is true. That way it can be true for everyone, even the people for whom it wasn't already obvious.
There is no winning, only balance.
We all know that apples fall from trees and that banging 2 rocks together makes sparks.
Maybe origins?
My point was that the basic ideas that have been studied and refined over centuries were simple.
https://www.mcgill.ca/oss/article/medical-critical-thinking/...
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10059777/
"Key controversies in blood microbiome research are the susceptibility of low-biomass samples to exogenous contamination and undetermined microbial viability from NGS-based microbial profiling"
Just because you can amplify some sporadic bacteria DNA from the blood does not mean that bacteria are hanging out in the blood in a physiologically meaningful way.
A lot of it is frankly junk science in disreputable journals.
On the otherhand: https://www.nature.com/articles/s41564-023-01350-w
"Despite this, we found no evidence for microbial co-occurrence relationships, core species or associations with host phenotypes."
That's the whole point of this sort of research - to find out if there are physiological connections and what they are.
As someone who knows someone at UNC Chapel Hill who was researching this starting about 15 years ago, the research community did not move on, the news just stopped talking/hyping about it.
Here is a recent paper: Oxidative stress: The core pathogenesis and mechanism of Alzheimer's disease
https://pubmed.ncbi.nlm.nih.gov/35395415/
It is fundamentally true that oxidative balance is crucial to health, and that nutrients play a large role in maintaining that balance; Manganese (SOD2) zinc/copper (SOD1/SOD3), Selenium/Riboflavin/Pyridoxine (Glutathione).
Deficiencies will not cause one disease, but many different ones, depending on the persons risk.
I think oxidative balance plays a large role in controlling the microbiome.
Nutrition, oxidative stress and intestinal dysbiosis: Influence of diet on gut microbiota in inflammatory bowel diseases
> Ani Biome uses machine learning models to provide personalized solutions for enhancing gut microbiome function and addressing inflammation, a prevalent factor in age-related chronic ailments.
But they are missing the blockchain component :)